I think i get what your saying, each point on the imobiliser unit has 2 wires and you run them to a wire like the starter and cut it and join the 2 wires into the 2 ends you now have. That sounds ok to me, too me it sound like the imobiliser is just a set of switched contacts, you should ba able to get a multimeter on the 2 wires and see if it opens and closes as you enable and dissable the unit, might help give you a clue too whats happening
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