_R_J_K_
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31 shouldn't affect the key not starting a car.
Yeah it will, the ECU is looking for the theft deterrent signal from the BCM but can't find it, so it won't start. It's the reason you get no-VATS memcals and why it tried to start after 2 hours, wouldn't be much of a theft deterrent if it didn't. Same thing happens when you put a VR memcal in a VS or vice versa.
OP, it can't hurt to swap the BCM over (you shouldn't need to do the ECU as they don't need to be linked) but keep in mind you'll also need to swap the key barrel too.
What trouble shooting have you done so far? Have you checked your fuses and earths? When/how did this start occurring? Does the radiator fan turn on when you try to start it?