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Somehow the engine shifted during the jacked up period or the heatshield shifted.Have you ever cleaned out the throttle body and the IAC port on the side? Just an idea as the IAC valve is the thing that's supposed to speed up the idle when AC is switched on. If you jacked up the engine to do the mounts then check all the attachments like brake booster hose, battery leads. All the vacuum hoses around the throttle body as well. But whenever my eco had a miss it was usually leads or coil.
Question is, why doesn't bolt hole line up??
That wire goes between the mount bracket and block not the compressor and yes I did make sure not to pinch it.I don't think there a wire there by looking at the diagram that earth wire is on the other side where the pipe goes to your heater tape, that wire in your photo not crushed between the engine block and compressor by any chance, also make sure your CAS is plugged in.
Was the noise there before you did your mounts?
What did you remove besides the A/C compressor and mounts?