Ultimately they're a business and want repeatable good results so it seems they favour their copy paste transmission tune and also their engine tune that is tweaked a little from car to car.
Daves8 maybe try Castle Hill performance if they're willing to do a transmission tune tweak?
Otherwise yet another idea I just thought of is, when I had the Rapid marriage savers on I noticed drone at 1200 rpm also for whatever reason. I fixed that by adding a H pipe to the rear of my centre section after the tunnel brace, cost $180 from Rapid. Made it more quiet but killed drone.
Dunno if you feel like having your centre section customized though..