i tried 2 sets of springs, both were the same afterwards. couldn't remember what the standard was like. :S
I suggest the springs are suspect if you are getting 1-2 cm variance side to side, and assuming nothing else has been modified and the springs have been seated correctly.
I have standard Fe2 suspension on my car (untouched) and I did a quick measure on each rear side after the car had been sitting quite a few hours. The difference in height from a bottom point of the rear wheel arch panel to the centre of the wheel on each side only varied side to side by about 4 mm which is not unusual. I have never found them to be precisely the same to the last mm on Commodores. On my car the passenger side rear is sitting very slightly higher at the measuring point than the drivers side rear and I have nearly a 7/8 full tank of fuel. The difference side to side is so small it is not discernible to the eye.
Yes the springs have to settle after you have jacked up the body but I have done this numerous times on my car on all 4 corners and have not had height balance issues or spring distortion afterwards.
I have also had low springs fitted on a few previous commodores and have never had any height balance issues or any spring distortion due to jacking the body. ( If you get distortion or other problems I would seriously question the quality of the springs).
With springs you get what you pay for. It would be interesting to know if anyone has had the height imbalance problem complained of here with Pedders lowered rear springs.