did you end up finding out were the random vacum hose at back of the block went? Because we have that also.. its not connected to anything..?
Too long ago and I can't remember. There's only a few hoses anyway. Brake booster, MAP sensor, Fuel Pressure Regulator (FPR) & vacuum supplied to the interior ventilation system in order to allow you to direct the air flow between your feet, the vents and windscreen demist. If you can't change your interior vents between these settings at idle, then that hose is a problem. If the vents change by themselves during hard acceleration then most likely you have an issue with the vacuum canister located under the passenger side guard. If either of these 2 scenarios is true, then you will by default have a vacuum leak in your intake system which will be contributing to your lack of performance and should be rectified. FPR hose disconnection could possibly cause your problems, so make sure your FPR which is located at the firewall end of the driver's side fuel rail has a vacuum hose connected to it and is receiving vacuum while the engine is running. Brake Booster & MAP hose disconnections would produce very obvious results so if it's one of these, you'd have other significant symptoms.
You also mentioned you had the timing done. Was this done correctly, while in diagnostic mode via the ALDL plug & the FPR vacuum hose disconnected and then timing set at 10° BTDC? If not, your timing will not be correct and would explain your lack of performance.
As for the breather hose from the trannie, it may be that if the hose disappears down towards the transmission. If so, it's meant to be open and not connected to anything as far as I know.
Chuff