There is slight differences between the engine harness to the dash plug, it will plug in but will need some pins moved, as suspected it could end badly if you were to simply plug it in without moving pins.... i didn't go into to much depth in that howto as the images gave a visual representation of what wires go where.
Hopefully the attached image explains it better, the connector is YB62
The top VR one shows the pinout, what ecu pin it connects to and what it does.
The bottom one is the VN pinout, "nc" means it had no connection after i got to the loom andchanges were made to line up the 2 looms to be correct (the labels above and below in the bottom YB62 image indicate what the pin was used for in the VN/VP, so things like the park/neutral switch are no longer used and left blank, VSS signal wire is moved to match the correct ecu pin to drive the speedo etc)
What used to be the trans temp sensor is now used for the pwr/eco button, i cut the wire near the shifter and wired it to the switch (irrelevant for a manual conversion), it went to the correct pin so it was easy to sort out.
If i get time i'll try to work the same thing out for VS manual into VN/VP