If there isnt enough base idle air going through, the engine is relying on the IAC to control Idle, if the IAC motor is compensating for this, the IAC motor will work at higher steps, the more IAC steps, the more air into the engine.
When backing the throttle of, manifold vacuum going up, and decel fuel cut gets engaged. If the IAC steps are to high, its like a massive vacuum leak and air flow will see show to high on the Maf sensor, so decel fuel cut wont be enabled.
No fuel into an engine wont make the rpm increase, however it will still slowly decrease.
Alot of manufactors stopped the idea of the dashpot, once catalitic converters were released.
So what your saying in all this is, Holdens released 100,000 manual cars 99% of the cars on the road dont suffer from this problem, and 1% have the problem, so how can this be an emission control.
What about larger cube engines eg LS1 series cars, why dont they have the same problem, after all they do have more emissions.
Personally what i would be doing, is clean the throttlebody, check and reset base idle air, reset fuel trims, and retry the car.