How did you wire up the window opener? Wiper just plug in the standard harness?
You need to repin most of it, the boot release for the sedans works on the wagon, slap a boot button in, the bcm will see it, add a pin to the connector on the bcm and run it to the rear and there's your boot pop, wiper is a bit more difficult. The wagons bcm controls the stock wiper, the adventras boot controls its wiper, so in intermittent the commo wagon will pulse its signal wire making the wiper sweep, the adventra will instead feed a solid power signal, then the boot will see that and pulse the wiper for intermittent. I havnt got around to doing it yet but you need mod the stalk, you need to leave the wash fullspeed wire alone, it should be fine(I tested it so in theory *fingers crossed*) you need to bypass the intermittent wire from the bcmso the stalk directly feeds the boot wire, then your low fast, auto park and all your "glass is open don't power the wipers" bs will work.
Mines running in dumb mode ATM, my bcm pulses back to the boot, that pulses the boots module, so instead of wiping and parking on the glass mine wipes and parks... every swipe... but I rarely use my rear except to clear the dust so I usually only use a single flick anyway.
Boot wiring is a bit of a mish mash, you need to keep the original commo plugs and repin the addy bits to it, (you don't really but it works better than redoing all the connectors) you'll also need another 2 pin plug, for the boot release and reverse light feed, I forgot xD, most wires are 1 for 1 colour wise, the demist wires have a thicker plug on the addy, so you'll need to splice the original commodore demist wires.
Probably missed a tonne, I'm sleep deprived atm , need any more info I'll rip my trim off and have a look fo jog the memory, also the post that Fu Manchu added has photos of the finished product.
Oh yeah, you have to either cut the corners off the tailgate or get an addy bumper.