There is an optional pollen filter that can be fitted in HVAC intake under the bonnet. If you bought the car secondhand, there may be one in there from the previous owner that has gone a bit manky. Just pop out the first six or so scrivets on the plenum cover on the passenger side, lift it up and have a look. You may need a torch, but it looks like a corrugated piece of white paper (may be dark though if it's old), in lieu of the OEM gauze screen thing.
If it's stuffed, you'll need to replace it. Some people have also had some success with aircon smells by spraying a good whack of glen 20 into the same intake to kill any bacteria floating around.