If the number 2 O2 sensors left & right bank were turned off with a HP Tuners then they probably forgot to turn off all the DTC codes and the (COT) cat over temp as well.
Depending on ECU's there is quite a few to check and see if they need switching off.
Here is a list of all the DTC numbers that need checking. Done quite a few v6 and v8's
Also turning them off you do not get a permanent error as someone stated earlier in fact it will pass the smog test on every handheld code scanner that does it.
Engine, Fuel Control, COT, Lean Cruise, Cat Over Temp Protection:
COT - Set to Disabled
Engine Diag, General, Catalyst:
Catalyst Test - Set to Disabled
Post O2, Post O2 Test - Set to Disabled
All these codes set to disabled if enabled
P0036
P0037
P0038
P0054
P0056
P0057
P0058
P0060
P0137
P0138
P013A
P013B
P013C
P013D
P013E
P013F
P0140
P0141
P014A
P014B
P0157
P0158
P0160
P0161
P2232
P2235
P2270
P2271
P2272
P2273
P0420
P0430
P2096
P2097
P2098
P2099